Detailed information of SNP:
|
SNP ID:
sf1016359481(Gbrowse)
Chromosome: chr10 Position: 16359481 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 64.67% | 35.33% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 37.83% | 62.17% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016359481 | C->T | INTERGENIC | None |