Detailed information of SNP:
|
SNP ID:
sf1016361305(Gbrowse)
Chromosome: chr10 Position: 16361305 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 91.64% | 8.36% |
| All Indica | 785 | 93.89% | 6.11% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 55 | 10.91% | 89.09% |
| Indica I | 363 | 90.63% | 9.37% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 0.00% | 100.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016361305 | G->A | INTERGENIC | None |