Detailed information of SNP:
|
SNP ID:
sf1016363676(Gbrowse)
Chromosome: chr10 Position: 16363676 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 50.07% | 49.93% |
| All Indica | 788 | 82.74% | 17.26% |
| All Japonica | 488 | 6.35% | 93.65% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 371 | 78.17% | 21.83% |
| Indica II | 207 | 88.89% | 11.11% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 87 | 28.74% | 71.26% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 35.90% | 64.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016363676 | C->G | INTERGENIC | None |