Detailed information of SNP:
|
SNP ID:
sf1016387037(Gbrowse)
Chromosome: chr10 Position: 16387037 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1201 | 97.75% | 2.25% |
| All Indica | 595 | 95.63% | 4.37% |
| All Japonica | 487 | 99.79% | 0.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 270 | 97.04% | 2.96% |
| Indica II | 157 | 94.27% | 5.73% |
| Indica Intermediate | 168 | 94.64% | 5.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 85 | 98.82% | 1.18% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016387037 | G->A | INTERGENIC | None |