Detailed information of SNP:
|
SNP ID:
sf1016388106(Gbrowse)
Chromosome: chr10 Position: 16388106 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.72% | 47.28% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 495 | 3.03% | 96.97% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 84.53% | 15.47% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016388106 | A->G | INTERGENIC | None |