Detailed information of SNP:
|
SNP ID:
sf1016391065(Gbrowse)
Chromosome: chr10 Position: 16391065 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 70.83% | 29.17% |
| All Indica | 793 | 97.98% | 2.02% |
| All Japonica | 495 | 22.63% | 77.37% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 334 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016391065 | T->G | INTERGENIC | None |