Detailed information of SNP:
|
SNP ID:
sf1016451149(Gbrowse)
Chromosome: chr10 Position: 16451149 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.94% | 45.06% |
| All Indica | 798 | 81.33% | 18.67% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 69.79% | 30.21% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 84.36% | 15.64% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016451149 | G->A | INTERGENIC | None |