Detailed information of SNP:
|
SNP ID:
sf1016457426(Gbrowse)
Chromosome: chr10 Position: 16457426 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 51.97% | 48.03% |
| All Indica | 750 | 18.53% | 81.47% |
| All Japonica | 496 | 95.16% | 4.84% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 332 | 28.31% | 71.69% |
| Indica II | 212 | 3.77% | 96.23% |
| Indica Intermediate | 206 | 17.96% | 82.04% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016457426 | A->T | INTERGENIC | None |