Detailed information of SNP:
|
SNP ID:
sf1016457912(Gbrowse)
Chromosome: chr10 Position: 16457912 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 62.96% | 37.04% |
| All Indica | 793 | 95.46% | 4.54% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016457912 | G->A | INTERGENIC | None |