Detailed information of SNP:



SNP ID: sf1016458419(Gbrowse)

Chromosome: chr10

Position: 16458419
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 55.15% 44.85%
All Indica799 25.78% 74.22%
All Japonica496 95.77% 4.23%
Aus67 95.52% 4.48%
Indica I375 41.07% 58.93%
Indica II213 3.29% 96.71%
Indica Intermediate211 21.33% 78.67%
Temperate Japonica335 99.10% 0.90%
Tropical Japonica94 95.74% 4.26%
Japonica Intermediate67 79.10% 20.90%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 54.76% 45.24%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1016458419 C->T INTERGENIC None