Detailed information of SNP:
|
SNP ID:
sf1016458419(Gbrowse)
Chromosome: chr10 Position: 16458419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 799 | 25.78% | 74.22% |
| All Japonica | 496 | 95.77% | 4.23% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 41.07% | 58.93% |
| Indica II | 213 | 3.29% | 96.71% |
| Indica Intermediate | 211 | 21.33% | 78.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016458419 | C->T | INTERGENIC | None |