Detailed information of SNP:
|
SNP ID:
sf1016463078(Gbrowse)
Chromosome: chr10 Position: 16463078 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 56.95% | 43.05% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 495 | 4.65% | 95.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.07% | 26.93% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016463078 | C->T | INTERGENIC | None |