Detailed information of SNP:



SNP ID: sf1016480422(Gbrowse)

Chromosome: chr10

Position: 16480422
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1366 75.99% 24.01%
All Indica787 93.27% 6.73%
All Japonica457 41.58% 58.42%
Aus67 98.51% 1.49%
Indica I372 93.55% 6.45%
Indica II213 94.37% 5.63%
Indica Intermediate202 91.58% 8.42%
Temperate Japonica302 18.21% 81.79%
Tropical Japonica93 93.55% 6.45%
Japonica Intermediate62 77.42% 22.58%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 82.93% 17.07%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1016480422 C->T LOC_Os10g31590(LOC_Os10g31590.1) Non-Synonymous SNP