Detailed information of SNP:
SNP ID:
sf1016480422(Gbrowse)
Chromosome: chr10 Position: 16480422 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1366 | 75.99% | 24.01% |
All Indica | 787 | 93.27% | 6.73% |
All Japonica | 457 | 41.58% | 58.42% |
Aus | 67 | 98.51% | 1.49% |
Indica I | 372 | 93.55% | 6.45% |
Indica II | 213 | 94.37% | 5.63% |
Indica Intermediate | 202 | 91.58% | 8.42% |
Temperate Japonica | 302 | 18.21% | 81.79% |
Tropical Japonica | 93 | 93.55% | 6.45% |
Japonica Intermediate | 62 | 77.42% | 22.58% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1016480422 | C->T | LOC_Os10g31590(LOC_Os10g31590.1) | Non-Synonymous SNP |