Detailed information of SNP:
|
SNP ID:
sf1016489789(Gbrowse)
Chromosome: chr10 Position: 16489789 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 87.68% | 12.32% |
| All Indica | 713 | 78.96% | 21.04% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 345 | 85.51% | 14.49% |
| Indica II | 183 | 68.31% | 31.69% |
| Indica Intermediate | 185 | 77.30% | 22.70% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016489789 | C->T | INTERGENIC | None |