Detailed information of SNP:
|
SNP ID:
sf1016490349(Gbrowse)
Chromosome: chr10 Position: 16490349 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1192 | 82.05% | 17.95% |
| All Indica | 642 | 92.21% | 7.79% |
| All Japonica | 456 | 67.54% | 32.46% |
| Aus | 51 | 80.39% | 19.61% |
| Indica I | 280 | 89.29% | 10.71% |
| Indica II | 193 | 94.30% | 5.70% |
| Indica Intermediate | 169 | 94.67% | 5.33% |
| Temperate Japonica | 313 | 88.82% | 11.18% |
| Tropical Japonica | 88 | 6.82% | 93.18% |
| Japonica Intermediate | 55 | 43.64% | 56.36% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 34 | 85.29% | 14.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016490349 | A->G | INTERGENIC | None |