Detailed information of SNP:
|
SNP ID:
sf1016494159(Gbrowse)
Chromosome: chr10 Position: 16494159 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 56.58% | 43.42% |
| All Indica | 798 | 84.34% | 15.66% |
| All Japonica | 496 | 4.84% | 95.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 72.46% | 27.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016494159 | C->A | LOC_Os10g31610(LOC_Os10g31610.1) | INTRON |