Detailed information of SNP:
|
SNP ID:
sf1016506389(Gbrowse)
Chromosome: chr10 Position: 16506389 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 56.82% | 43.18% |
| All Indica | 797 | 84.44% | 15.56% |
| All Japonica | 496 | 5.04% | 94.96% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 72.65% | 27.35% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016506389 | G->A | LOC_Os10g31630(LOC_Os10g31630.1) | Non-Synonymous SNP |