Detailed information of SNP:
|
SNP ID:
sf1016545768(Gbrowse)
Chromosome: chr10 Position: 16545768 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.69% | 37.31% |
| All Indica | 799 | 38.55% | 61.45% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 49.07% | 50.93% |
| Indica II | 213 | 12.68% | 87.32% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016545768 | C->T | LOC_Os10g31700(LOC_Os10g31700.1) | INTRON |