Detailed information of SNP:
|
SNP ID:
sf1016562388(Gbrowse)
Chromosome: chr10 Position: 16562388 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 64.22% | 35.78% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016562388 | A->G | INTERGENIC | None |