Detailed information of SNP:
|
SNP ID:
sf1016634789(Gbrowse)
Chromosome: chr10 Position: 16634789 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 66.10% | 33.90% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 6.44% | 93.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016634789 | A->T | LOC_Os10g31850(LOC_Os10g31850.2) | Non-Synonymous SNP |
| sf1016634789 | A->T | LOC_Os10g31850(LOC_Os10g31850.5) | UTR_3_PRIME |
| sf1016634789 | A->T | LOC_Os10g31850(LOC_Os10g31850.1) | Non-Synonymous SNP |