Detailed information of SNP:
|
SNP ID:
sf1016693958(Gbrowse)
Chromosome: chr10 Position: 16693958 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 59.76% | 40.24% |
| All Indica | 797 | 89.34% | 10.66% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 87.70% | 12.30% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016693958 | T->A | INTERGENIC | None |