Detailed information of SNP:
|
SNP ID:
sf1016694308(Gbrowse)
Chromosome: chr10 Position: 16694308 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.19% | 44.81% |
| All Indica | 797 | 26.73% | 73.27% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 25.13% | 74.87% |
| Indica II | 213 | 17.37% | 82.63% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016694308 | G->A | INTERGENIC | None |