Detailed information of SNP:
|
SNP ID:
sf1016715916(Gbrowse)
Chromosome: chr10 Position: 16715916 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.68% | 14.32% |
| All Indica | 798 | 78.57% | 21.43% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 78.88% | 21.12% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016715916 | G->A | INTERGENIC | None |