Detailed information of SNP:
|
SNP ID:
sf1016743380(Gbrowse)
Chromosome: chr10 Position: 16743380 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 66.36% | 33.64% |
| All Indica | 797 | 99.50% | 0.50% |
| All Japonica | 484 | 5.79% | 94.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 326 | 0.92% | 99.08% |
| Tropical Japonica | 90 | 6.67% | 93.33% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 71.05% | 28.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016743380 | T->A | INTERGENIC | None |