Detailed information of SNP:
|
SNP ID:
sf1016749595(Gbrowse)
Chromosome: chr10 Position: 16749595 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 59.79% | 40.21% |
| All Indica | 797 | 92.22% | 7.78% |
| All Japonica | 495 | 15.15% | 84.85% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016749595 | T->C | INTERGENIC | None |