Detailed information of SNP:
|
SNP ID:
sf1016764564(Gbrowse)
Chromosome: chr10 Position: 16764564 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 62.83% | 37.17% |
| All Indica | 798 | 95.99% | 4.01% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 26.47% | 73.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016764564 | G->A | INTERGENIC | None |