Detailed information of SNP:
|
SNP ID:
sf1016776031(Gbrowse)
Chromosome: chr10 Position: 16776031 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 66.19% | 33.81% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 484 | 7.02% | 92.98% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 324 | 2.47% | 97.53% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016776031 | C->T | INTERGENIC | None |