Detailed information of SNP:
|
SNP ID:
sf1016780394(Gbrowse)
Chromosome: chr10 Position: 16780394 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 62.93% | 37.07% |
| All Indica | 794 | 94.71% | 5.29% |
| All Japonica | 494 | 5.67% | 94.33% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 332 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016780394 | T->C | INTERGENIC | None |