Detailed information of SNP:
|
SNP ID:
sf1016811665(Gbrowse)
Chromosome: chr10 Position: 16811665 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1352 | 65.53% | 34.47% |
| All Indica | 788 | 97.59% | 2.41% |
| All Japonica | 493 | 16.02% | 83.98% |
| Aus | 26 | 53.85% | 46.15% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 66 | 42.42% | 57.58% |
| Group VI/Aromatic | 8 | 12.50% | 87.50% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016811665 | A->G | INTERGENIC | None |