Detailed information of SNP:
|
SNP ID:
sf1016819866(Gbrowse)
Chromosome: chr10 Position: 16819866 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.20% | 33.80% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 91.98% | 8.02% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016819866 | A->G | INTERGENIC | None |