Detailed information of SNP:
|
SNP ID:
sf1016827777(Gbrowse)
Chromosome: chr10 Position: 16827777 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 58.66% | 41.34% |
| All Indica | 798 | 90.85% | 9.15% |
| All Japonica | 494 | 14.78% | 85.22% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016827777 | T->C | INTERGENIC | None |