Detailed information of SNP:
|
SNP ID:
sf1016847441(Gbrowse)
Chromosome: chr10 Position: 16847441 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 55.33% | 44.67% |
| All Indica | 798 | 26.57% | 73.43% |
| All Japonica | 497 | 95.77% | 4.23% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 23.73% | 76.27% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016847441 | G->A | INTERGENIC | None |