Detailed information of SNP:
|
SNP ID:
sf1016848038(Gbrowse)
Chromosome: chr10 Position: 16848038 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 70.08% | 29.92% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 497 | 25.55% | 74.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016848038 | T->C | LOC_Os10g32210(LOC_Os10g32210.1) | Synonymous |