Detailed information of SNP:
|
SNP ID:
sf1016848039(Gbrowse)
Chromosome: chr10 Position: 16848039 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1340 | 64.33% | 35.67% |
| All Indica | 729 | 39.51% | 60.49% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 66 | 87.88% | 12.12% |
| Indica I | 335 | 42.69% | 57.31% |
| Indica II | 196 | 27.55% | 72.45% |
| Indica Intermediate | 198 | 45.96% | 54.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016848039 | G->A | LOC_Os10g32210(LOC_Os10g32210.1) | Non-Synonymous SNP |