Detailed information of SNP:



SNP ID: sf1016849094(Gbrowse)

Chromosome: chr10

Position: 16849094
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1408 94.25% 5.75%
All Indica799 99.87% 0.13%
All Japonica487 83.98% 16.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica88 23.86% 76.14%
Japonica Intermediate64 85.94% 14.06%
Group VI/Aromatic14 100.00% 0.00%
Intermediate41 95.12% 4.88%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1016849094 C->T INTERGENIC None