Detailed information of SNP:
|
SNP ID:
sf1016857556(Gbrowse)
Chromosome: chr10 Position: 16857556 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 93.98% | 6.02% |
| All Indica | 769 | 92.46% | 7.54% |
| All Japonica | 473 | 97.04% | 2.96% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 356 | 91.85% | 8.15% |
| Indica II | 208 | 92.31% | 7.69% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 74 | 85.14% | 14.86% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016857556 | C->T | LOC_Os10g32240(LOC_Os10g32240.1) | Synonymous |