Detailed information of SNP:
|
SNP ID:
sf1016858645(Gbrowse)
Chromosome: chr10 Position: 16858645 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 72.00% | 28.00% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 24.95% | 75.05% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016858645 | A->G | LOC_Os10g32250(LOC_Os10g32250.1) | Non-Synonymous SNP |