Detailed information of SNP:
SNP ID:
sf1016858947(Gbrowse)
Chromosome: chr10 Position: 16858947 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 72.16% | 27.84% |
All Indica | 799 | 98.75% | 1.25% |
All Japonica | 497 | 24.95% | 75.05% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.67% | 1.33% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 98.58% | 1.42% |
Temperate Japonica | 335 | 1.49% | 98.51% |
Tropical Japonica | 94 | 91.49% | 8.51% |
Japonica Intermediate | 68 | 48.53% | 51.47% |
Group VI/Aromatic | 14 | 92.86% | 7.14% |
Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1016858947 | C->T | LOC_Os10g32250(LOC_Os10g32250.1) | Non-Synonymous SNP |