Detailed information of SNP:
|
SNP ID:
sf1016861145(Gbrowse)
Chromosome: chr10 Position: 16861145 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 60.67% | 39.33% |
| All Indica | 757 | 34.21% | 65.79% |
| All Japonica | 494 | 96.36% | 3.64% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 352 | 27.27% | 72.73% |
| Indica II | 205 | 36.10% | 63.90% |
| Indica Intermediate | 200 | 44.50% | 55.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016861145 | C->T | INTERGENIC | None |