Detailed information of SNP:



SNP ID: sf1016874254(Gbrowse)

Chromosome: chr10

Position: 16874254
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1415 94.35% 5.65%
All Indica795 90.31% 9.69%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I373 87.13% 12.87%
Indica II211 91.94% 8.06%
Indica Intermediate211 94.31% 5.69%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1016874254 C->T LOC_Os10g32290(LOC_Os10g32290.1) Non-Synonymous SNP