Detailed information of SNP:
|
SNP ID:
sf1016943296(Gbrowse)
Chromosome: chr10 Position: 16943296 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 54.50% | 45.50% |
| All Indica | 791 | 78.51% | 21.49% |
| All Japonica | 495 | 20.61% | 79.39% |
| Aus | 62 | 35.48% | 64.52% |
| Indica I | 371 | 82.75% | 17.25% |
| Indica II | 213 | 67.61% | 32.39% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 66 | 28.79% | 71.21% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 40 | 40.00% | 60.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016943296 | T->C | INTERGENIC | None |