Detailed information of SNP:
|
SNP ID:
sf1016944276(Gbrowse)
Chromosome: chr10 Position: 16944276 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 57.19% | 42.81% |
| All Indica | 785 | 82.04% | 17.96% |
| All Japonica | 497 | 21.53% | 78.47% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 367 | 87.19% | 12.81% |
| Indica II | 209 | 68.90% | 31.10% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016944276 | T->C | INTERGENIC | None |