Detailed information of SNP:
|
SNP ID:
sf1016944550(Gbrowse)
Chromosome: chr10 Position: 16944550 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 50.28% | 49.72% |
| All Indica | 792 | 30.43% | 69.57% |
| All Japonica | 496 | 79.23% | 20.77% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 371 | 25.61% | 74.39% |
| Indica II | 212 | 45.28% | 54.72% |
| Indica Intermediate | 209 | 23.92% | 76.08% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016944550 | A->G | INTERGENIC | None |