Detailed information of SNP:
|
SNP ID:
sf1016961804(Gbrowse)
Chromosome: chr10 Position: 16961804 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 94.92% | 5.08% |
| All Indica | 797 | 91.34% | 8.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 90.88% | 9.12% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1016961804 | G->A | LOC_Os10g32520(LOC_Os10g32520.1) | INTRON |
| sf1016961804 | G->A | LOC_Os10g32520(LOC_Os10g32520.4) | INTRON |
| sf1016961804 | G->A | LOC_Os10g32520(LOC_Os10g32520.3) | INTRON |