Detailed information of SNP:
|
SNP ID:
sf1017007719(Gbrowse)
Chromosome: chr10 Position: 17007719 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 58.66% | 41.34% |
| All Indica | 799 | 96.87% | 3.13% |
| All Japonica | 487 | 4.72% | 95.28% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 326 | 1.23% | 98.77% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017007719 | T->A | INTERGENIC | None |