Detailed information of SNP:
|
SNP ID:
sf1017013919(Gbrowse)
Chromosome: chr10 Position: 17013919 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 62.81% | 37.19% |
| All Indica | 798 | 89.72% | 10.28% |
| All Japonica | 431 | 6.03% | 93.97% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 275 | 0.73% | 99.27% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 63 | 28.57% | 71.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017013919 | T->C | INTERGENIC | None |