Detailed information of SNP:
|
SNP ID:
sf1017015800(Gbrowse)
Chromosome: chr10 Position: 17015800 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 53.98% | 46.02% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 497 | 7.65% | 92.35% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 88.80% | 11.20% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 27.94% | 72.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017015800 | C->T | INTERGENIC | None |