Detailed information of SNP:
|
SNP ID:
sf1017022399(Gbrowse)
Chromosome: chr10 Position: 17022399 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 93.37% | 6.63% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 495 | 81.82% | 18.18% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017022399 | C->T | LOC_Os10g32630(LOC_Os10g32630.1) | Non-Synonymous SNP |