Detailed information of SNP:
|
SNP ID:
sf1017023183(Gbrowse)
Chromosome: chr10 Position: 17023183 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 52.27% | 47.73% |
| All Indica | 766 | 19.45% | 80.55% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 357 | 17.93% | 82.07% |
| Indica II | 201 | 19.90% | 80.10% |
| Indica Intermediate | 208 | 21.63% | 78.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017023183 | C->T | LOC_Os10g32630(LOC_Os10g32630.1) | Non-Synonymous SNP |