Detailed information of SNP:



SNP ID: sf1017026784(Gbrowse)

Chromosome: chr10

Position: 17026784
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1417 79.68% 20.32%
All Indica799 87.36% 12.64%
All Japonica497 79.48% 20.52%
Aus67 14.93% 85.07%
Indica I375 88.00% 12.00%
Indica II213 88.73% 11.27%
Indica Intermediate211 84.83% 15.17%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 10.64% 89.36%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate40 65.00% 35.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1017026784 A->C LOC_Os10g32640(LOC_Os10g32640.1) INTRON