Detailed information of SNP:
|
SNP ID:
sf1017026784(Gbrowse)
Chromosome: chr10 Position: 17026784 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 79.68% | 20.32% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017026784 | A->C | LOC_Os10g32640(LOC_Os10g32640.1) | INTRON |