Detailed information of SNP:
|
SNP ID:
sf1017026829(Gbrowse)
Chromosome: chr10 Position: 17026829 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 86.70% | 13.30% |
| All Indica | 796 | 87.44% | 12.56% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 209 | 83.73% | 16.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1017026829 | T->C | LOC_Os10g32640(LOC_Os10g32640.1) | INTRON |